Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015909837.1_cds_XP_016459929.1_53404
CDS Infomation

[gene=LOC107783470] [db_xref=GeneID:107783470] [protein=probable pectate lyase 8] [protein_id=XP_016459929.1] [location=join(35230..35336,35877..35930,36573..36647,37724..38366,38458..38561,38788..38926,39003..39224)] [gbkey=CDS]
Sequence

ATGGCAATGGGTTCGTTGCTTTCATTTAGTCTCAGTTCTCTGCTTCTTCTTTTGCTGCTC
GTCGGAGTTTACGCCGGTGTTCAGACTACCGACAGTTTCGACGTCAGGACAGTGGAAAAA
GTGCAGTTGAAGAGCTCTGAAAACTTAACAATGGCGGCGAGTTTGGAAGAGATTGAGGAG
AAATTAAGCAAACATGCAGTGGATGATCCAGAACAAGTTGTGTCCATGGTTGCAGAGAGC
ATTAGGAACAGCACTGAGAGGCGAAGACTTGGATATTTCTCATGTGGGACAGGAAATCCA
ATTGATGACTGCTGGCGTTGTGACCCAAATTGGCAAAAGAACCGCAAGCGCCTTGCTGAT
TGTGGCATTGGATTTGGGCGCAATGCCATTGGTGGTCGCGATGGTCGTTACTATGTTGTC
ACTGATTCGCGCGACGATGACCCTGTTAACCCCAGGCCCGGTACCCTTCGCCATGCTGTT
ATCCAGGAGGAGCCTCTATGGATTGTTTTCAACCGTGACATGGTCATACAATTGAAACAG
GAGCTCATTATGAACAGTTTCAAGACTATCGATGCCCGTGGCTACAATGTTCACATAGCC
AATGGTGCTTGTATCACAATTCAGTTTGTTACAAATATTATTATCCATGGCCTTCACATT
CATGATTGCAAGCCAACGGGGAATGCTATGGTGAGGAGTTCGACGACCCATTTCGGCTGG
AGGACAATGGCTGATGGTGATGCCGTTTCAATCTTTGGCTCAAGCCACATATGGGTTGAT
CATAACTCACTCTCTCACTGTGCTGATGGTCTTGTTGATGCTGTTATGGGCTCAACTGCC
ATTACTATTTCTAACAATCATTTCGCCCATCATAATGAGGTCATGCTATTGGGCCACAGT
GACTCCTACACTAGAGACAAGCAGATGCAAGTGACAATTGCCTATAACCACTTTGGAGAA
GGTCTCATTCAAAGAATGCCAAGATGCAGACATGGCTACTTCCATGTGGTGAACAATGAC
TACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGTCAA
GGAAACAGATACCTTGCCCCAACTAATCCTTTTGCAAAGGAGGTAACAAAAAGGGTTGAC
ACAGCAGCAGGTCAATGGAAGGGTTGGAACTGGAGATCAGAGGGAGACTTGATGCTTAAT
GGTGCCTATTTCACTCCATCAGGAGCTGGAGCTTCAGCCAGCTATGCAAGAGCTTCAAGC
TTAGGTGCCAAATCCTCTTCTATGGTGGGCGCCATAACTTCAGGTGCTGGTCCCCTTGCT
TGCCGCAGAAGCCGCATGTGCTAG

Peptide Sequence

PEP ID

XP_016459929.1
PEP Infomation

PREDICTED: probable pectate lyase 8 [Nicotiana tabacum]
Sequence

MAMGSLLSFSLSSLLLLLLLVGVYAGVQTTDSFDVRTVEKVQLKSSENLTMAASLEEIEE
KLSKHAVDDPEQVVSMVAESIRNSTERRRLGYFSCGTGNPIDDCWRCDPNWQKNRKRLAD
CGIGFGRNAIGGRDGRYYVVTDSRDDDPVNPRPGTLRHAVIQEEPLWIVFNRDMVIQLKQ
ELIMNSFKTIDARGYNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSTTHFGW
RTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFAHHNEVMLLGHS
DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ
GNRYLAPTNPFAKEVTKRVDTAAGQWKGWNWRSEGDLMLNGAYFTPSGAGASASYARASS
LGAKSSSMVGAITSGAGPLACRRSRMC

Transcript Sequence

Gene sequence data has not been registered.